Protein Info for HUW76_03970 in Fusobacterium nucleatum SB010

Annotation: TRAP transporter small permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 40 to 61 (22 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 121 to 145 (25 residues), see Phobius details PF04290: DctQ" amino acids 21 to 147 (127 residues), 104.1 bits, see alignment E=2.7e-34

Best Hits

KEGG orthology group: None (inferred from 88% identity to fnu:FN1257)

Predicted SEED Role

"TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (156 amino acids)

>HUW76_03970 TRAP transporter small permease (Fusobacterium nucleatum SB010)
MKNFFKKFELYIGSIFISVTTLVVIMNVFTRYFLKFTYFWTEEIAVGCFVWTIFLGTAAA
YREKGLIGVEAIVVLLPEKIRNIVEFLTYILLTILSGLMCVFSFTYVSSSSKITAALELS
YGYINISIVISFALMTLYSIIFTVGSFKKAFLKKDN