Protein Info for HUW76_03875 in Fusobacterium nucleatum SB010

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1022 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 331 to 350 (20 residues), see Phobius details amino acids 357 to 376 (20 residues), see Phobius details amino acids 383 to 408 (26 residues), see Phobius details amino acids 429 to 451 (23 residues), see Phobius details amino acids 462 to 484 (23 residues), see Phobius details amino acids 522 to 541 (20 residues), see Phobius details amino acids 838 to 857 (20 residues), see Phobius details amino acids 863 to 886 (24 residues), see Phobius details amino acids 893 to 917 (25 residues), see Phobius details amino acids 939 to 960 (22 residues), see Phobius details amino acids 970 to 996 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 996 (992 residues), 754.2 bits, see alignment E=3.1e-230 PF03176: MMPL" amino acids 833 to 996 (164 residues), 38.1 bits, see alignment E=1.4e-13

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 86% identity to fnu:FN1275)

Predicted SEED Role

"Acriflavin resistance protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1022 amino acids)

>HUW76_03875 efflux RND transporter permease subunit (Fusobacterium nucleatum SB010)
MSLAGISIRRPVATTMVMVSFIFIGLLAMFSMKKELIPNINIPVVTISTTWNGAVAEDVE
TQVTKKIKDSLSNVEAIDKIQTVSSYGSSSVVVNFDFGVDTNDKVTQIQREVSKITNDLP
KDANTPIVRKVDAATGSMTAIIAFNSDNKTALNTFIKEKLKPRLESLAGIGEVTIAGNPE
KQLQIQVDSDKLSAYNLSPMELYNIIRTAVTTYPIGKLSTGDKDMIIRFMGELDYIDQYE
NILISSDGNTLRLKDVANVVLTTEDPDRLGYLKGKDSIIVLLSKSSDGDTIGLNSAAFKV
IEEMKPYMPAGTEYSIELDNSENINSSISNVSSSAIQGLVLATIILFAFLKSFRTTVLIS
LALPVAIIFTFAFLSMRGTTLNLISLMGLSIGVGMLTDNSVVVVDNIYRHITELNSPVLE
AAENGTEEVTFSVIASALTTMVVFIPILFIPGMAREFFRDMSYAIIFSNLAAIIVAITMI
PMLASRFLNRKSMKTEDGRLFKKVKERYLKIIHWAYAHKGKTVFIMVFLFFFSIFIGPKL
LKFEFMPKQDEGKYSLMAELQNGTDIEKAKRIARELENIVKNESHTKSYLMLVSTSNISI
NADVGKKGTRKESVFDIMNDVRKQAKNVLDARISLSNQFSGGRSTKDVEFLIQGMNQDEI
KQFGKQILKKLQNYDGIVDLSSTLDPGIIELRINIDRDKITSYGINPTVVAQTLSYYMLG
GDKANTATLKTDSEEIDVLIRLPKDKRNDINILQSLNIKVGDNKFVKLSDVATIQYAEGT
SEINKKNGIYTVTISANDGGVGLRAIQQKMIEEFNSLNPPSSISYSWGGQTENMQKTMSQ
LTFALSISIFLIYALLASQFESFIMPIIIIGSIPLALIGVIWGLVVTRQSIDIMVMIGVI
LLAGVVVNNAIVLIDFIKTMRTRGHDKEYSIMYSCETRLRPILMTTMTTVFGMMPMALGL
GEGSEFYRGMAITVIFGLSFSTILTLVLIPVLYSVVDDFTTKLITKIKNISNKSKKKGVN
NG