Protein Info for HUW76_02735 in Fusobacterium nucleatum SB010

Annotation: replication-associated recombination protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 PF05496: RuvB_N" amino acids 18 to 137 (120 residues), 55.2 bits, see alignment E=2.2e-18 PF07728: AAA_5" amino acids 51 to 143 (93 residues), 34.7 bits, see alignment E=5e-12 PF00004: AAA" amino acids 52 to 158 (107 residues), 58.7 bits, see alignment E=2.5e-19 PF16193: AAA_assoc_2" amino acids 181 to 251 (71 residues), 54.2 bits, see alignment E=4.2e-18 PF12002: MgsA_C" amino acids 252 to 405 (154 residues), 196.8 bits, see alignment E=7.7e-62

Best Hits

KEGG orthology group: K07478, putative ATPase (inferred from 96% identity to fnu:FN0297)

Predicted SEED Role

"ATPase, AAA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>HUW76_02735 replication-associated recombination protein A (Fusobacterium nucleatum SB010)
MNLFQKNYKNVEPLAYKLRPKSLEDFVGQEKLLGKDGVITRLILNSTLSNSIFYGPPGCG
KSSLGEIISNTLDCNFEKLNATTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFNKN
QQDALLSYTEDGTLTLIGATTENPYYNINNALLSRVMVFEFKALTNEDILKLINKGLNFL
NISMSDKIKEIIIDISQGDSRIALNYVEMYNNIHTQMSEDEIFSIFKERQVSFDKKQDKY
DMISAFIKSVRGSDPDAAVYWLARLLDGGEDPKYMARRLFIEASEDIGMANPEALLIASA
AMNACEKIGMPEVRIILAHATIYLAISSKSNSVYEAIDGALADIKKGELQEVPINICHDN
VGYKYPHNYTDNFVKQKYMNKKKKYYKPSNNKNEKMIAEKLNKLWNE