Protein Info for HMPREF1181_RS16890 in Bacteroides stercoris CC31F

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 PF09820: AAA-ATPase_like" amino acids 7 to 282 (276 residues), 357 bits, see alignment E=7.6e-111 PF08011: PDDEXK_9" amino acids 421 to 512 (92 residues), 89.6 bits, see alignment E=1.2e-29

Best Hits

KEGG orthology group: None (inferred from 76% identity to osp:Odosp_1722)

Predicted SEED Role

"Conserved protein, with a weak D-galactarate dehydratase/altronate hydrolase domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (517 amino acids)

>HMPREF1181_RS16890 ATP-binding protein (Bacteroides stercoris CC31F)
MSNKIYPIGIQNFEKIRKDGYFYIDKTAWVYQLAKTGSYYFLSRPRRFGKSLLISTLEAY
FRGKKELFKGLAIEKLEKDWTEHPILHLDLNIERYDTPESLGNILEKNLSEWEKLYGADV
SERTYSLRFAGIIKRACEQTGQRVVILVDEYDKPMLQAIGNGELQKEYCNTLKPFYGVLK
TMDGCIKLAFLTGVTKFGKISVFSDLNNLDDISMQEMYVGLCGITGQEIHDNLEEELHEL
ADAQKMTYEEACAELKRRYDGYHFVENTEGIYNPFSLLNTFKYKKFGSYWFETGTPTYLI
ELLKRYHYDLEHMAHAETYADVLNSIYGDEEPLPVIFQSGYLTIKGYDERFGIYRLGFPN
REVEEGFVRFLIPYYTRFNKIEAPFEIQKFVQEIERGEPDAFFRRLQSFFADTPYELVKE
LELHYQNVLFIVFKLVGFYVKAEYHTSQGRIDLVLQTDKYVYVMEFKLNGTAEEALQQIN
DKQYALPFAADSRKVLKIGVNFSNTTRNIERWVVEEL