Protein Info for HMPREF1181_RS16170 in Bacteroides stercoris CC31F

Annotation: PH domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 498 transmembrane" amino acids 16 to 40 (25 residues), see Phobius details amino acids 53 to 76 (24 residues), see Phobius details amino acids 198 to 216 (19 residues), see Phobius details amino acids 237 to 260 (24 residues), see Phobius details amino acids 369 to 390 (22 residues), see Phobius details amino acids 396 to 415 (20 residues), see Phobius details PF03703: bPH_2" amino acids 75 to 139 (65 residues), 28.2 bits, see alignment E=9.4e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (498 amino acids)

>HMPREF1181_RS16170 PH domain-containing protein (Bacteroides stercoris CC31F)
MKTNDFSAPRRMSKSAFVIFLVNNLWLYAKYFLFIVILELFNSEKKLSFIEAALDFLVVL
AICLTLAAVIAFINYYSKKYYVENGNLIFIHGLVRKEITSISLTKIHSLRTKQGLIYRLL
DMKGVSFDTLASQSEEIEMILDNEDWEALLSRIETLDSQTQIQASEADKIEEKTDGYTTK
LSVGNLNLIKGALCQNHLRGMVVFGSILVTLYDQIISVNENAVEYFYGYMATHADFLRLS
LSSCITVAAILYIVTLLLWLGKVFLRYFNMDIRIDREQLFFESGLISRNSSRFSYDKICT
VYIKRNIIEKWLACSTVMLKQALNATDRNRGADVRIYGSDSATTFLDWWLGKDYASSQPI
VSAQSGYGLLGYTIRFDLLVSLAAGIALCYFQYYGWLWLPVVYMLISLIKGIFAVRRSSI
TLKEDYVEINSGKFAEVKNYFKYSNMEVVRMTATPFTPFYHRVNLVISTNGSSFTIRSLK
EQEAKEIYELLLYNCYIK