Protein Info for HMPREF1181_RS16015 in Bacteroides stercoris CC31F

Annotation: ammonium transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 54 to 73 (20 residues), see Phobius details amino acids 94 to 117 (24 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details amino acids 215 to 236 (22 residues), see Phobius details amino acids 257 to 274 (18 residues), see Phobius details amino acids 294 to 315 (22 residues), see Phobius details amino acids 322 to 339 (18 residues), see Phobius details amino acids 344 to 364 (21 residues), see Phobius details amino acids 376 to 396 (21 residues), see Phobius details amino acids 404 to 404 (1 residues), see Phobius details amino acids 408 to 433 (26 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 52 to 463 (412 residues), 443.1 bits, see alignment E=4.7e-137 PF00909: Ammonium_transp" amino acids 54 to 463 (410 residues), 422.9 bits, see alignment E=5.6e-131

Best Hits

KEGG orthology group: None (inferred from 82% identity to bhl:Bache_2071)

Predicted SEED Role

"Ammonium transporter family" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (464 amino acids)

>HMPREF1181_RS16015 ammonium transporter (Bacteroides stercoris CC31F)
MDKYMKRSFTKLRTALAILIACCLTTDMYAQTAVAADSVATDTVAQLVSGVNTVWMLLAA
MLVFFMQPGFALVEAGFTRTKNTANILMKNFVDFMFGSLLYWLVGFGIMFGLGDFFGTPH
LMSLLFDSNGLPDPASLPTEGFLVFQTVFCATSATIVSGAMAERTKFSMYLVYTIFISVL
IYPVSGHWTWGGGWLMNGEAGSFMTETFGTTFHDFAGSTIVHSVGGWIALVGAAILGPRI
GKYGKDGRSKAIPGHNLTIAALGVFILWFGWFGFNPGSQLAAATTEDQVTVSLVFLNTNL
AACAGGFFALAVSWLKYGKPSLSLTLNGILAGLVGITAGCDAVAPLGAVIIGAICGVLMI
YAVEFIDKVLKIDDPIGASSVHGVCGFTGTVLTGLFSTSEGLFYGAGAGFLGAQIFGAVI
VGLWAAGMGFIIFKVLDKIHGLRVPARVEEEGLDIYEHGESAYN