Protein Info for HMPREF1181_RS15430 in Bacteroides stercoris CC31F

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 transmembrane" amino acids 258 to 276 (19 residues), see Phobius details amino acids 317 to 338 (22 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 6 to 110 (105 residues), 37.2 bits, see alignment E=5.2e-13 PF00535: Glycos_transf_2" amino acids 9 to 112 (104 residues), 125.6 bits, see alignment E=3e-40 PF10111: Glyco_tranf_2_2" amino acids 9 to 105 (97 residues), 46.6 bits, see alignment E=5e-16

Best Hits

Predicted SEED Role

"glycosyltransferase family 2 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (348 amino acids)

>HMPREF1181_RS15430 glycosyltransferase (Bacteroides stercoris CC31F)
MERNIPEISVIVPVYNVEQYLAECISSILSQTFTDFELLLVDDGSPDRCGEICDEYAGKD
KRVRVFHQENAGLSCARNKGLEHASGTYIAFVDSDDYVTSTYLQELYASLPADKSQRGTV
ICGFDKLFPDGSLHTVHVPQQTILPMDCSRVLAELVGKYVMYAWAKLYDNRLIKEHGIRF
VPAVSGLEDMLFMLDYLPYSDYLLIRDTSTYIYRVGYSMATLSTCIKDFRSEYAAFSNYL
ERVCRYKETYRLEDSSLVGVWDSLTVFFHKILLAIYKKENHYSRKERIVFLRQLLSSHRR
WIEECFSPRYKADKFSSFLLVNVGAVAFDAWMRCLWGIKFRYMFGAER