Protein Info for HMPREF1181_RS15125 in Bacteroides stercoris CC31F

Annotation: Fe-S cluster domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR01944: electron transport complex, RnfABCDGE type, B subunit" amino acids 1 to 97 (97 residues), 73.2 bits, see alignment E=1e-24 PF04060: FeS" amino acids 44 to 76 (33 residues), 33.5 bits, see alignment 1.5e-11 PF12838: Fer4_7" amino acids 142 to 187 (46 residues), 42 bits, see alignment 5.7e-14 amino acids 220 to 263 (44 residues), 40.2 bits, see alignment 2.1e-13 PF12800: Fer4_4" amino acids 142 to 155 (14 residues), 12.3 bits, see alignment (E = 0.00011) amino acids 171 to 185 (15 residues), 16 bits, see alignment (E = 7e-06) amino acids 220 to 233 (14 residues), 16.8 bits, see alignment (E = 3.9e-06) amino acids 247 to 263 (17 residues), 13.2 bits, see alignment (E = 5.5e-05) PF13187: Fer4_9" amino acids 142 to 187 (46 residues), 38.1 bits, see alignment 7e-13 amino acids 220 to 264 (45 residues), 35.8 bits, see alignment 3.5e-12 PF12837: Fer4_6" amino acids 166 to 188 (23 residues), 28.6 bits, see alignment (E = 5.6e-10) amino acids 243 to 263 (21 residues), 25.1 bits, see alignment (E = 6.9e-09) PF00037: Fer4" amino acids 166 to 189 (24 residues), 33.3 bits, see alignment (E = 1.6e-11) amino acids 221 to 237 (17 residues), 27.7 bits, see alignment (E = 9.5e-10) amino acids 244 to 265 (22 residues), 27.2 bits, see alignment (E = 1.4e-09) PF12797: Fer4_2" amino acids 166 to 184 (19 residues), 26 bits, see alignment (E = 3.3e-09) PF13237: Fer4_10" amino acids 167 to 232 (66 residues), 26.2 bits, see alignment E=3.6e-09 amino acids 220 to 261 (42 residues), 30.3 bits, see alignment 1.9e-10 PF13534: Fer4_17" amino acids 172 to 232 (61 residues), 25.5 bits, see alignment E=8.3e-09 PF13484: Fer4_16" amino acids 172 to 233 (62 residues), 32.2 bits, see alignment E=8.3e-11

Best Hits

KEGG orthology group: None (inferred from 84% identity to bhl:Bache_2500)

Predicted SEED Role

"Electron transport complex protein RnfB" in subsystem Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (336 amino acids)

>HMPREF1181_RS15125 Fe-S cluster domain-containing protein (Bacteroides stercoris CC31F)
MNVILIAVISLGAIALVAAVILYVASKKFAVYEDPRIAQVAAVLPQANCGGCGYPGCSGF
ADACVKAGSLEGKLCPVGGQPVMTKVAEILGLDAAAAEPMVAVVRCNGTCANRPRVNQYD
GAKSCAIAASLYGGETGCSFGCLGCGDCVSACQFGAIRMNPETGLPEVDESKCTACGACA
KACPRNIIEIRPQGKKSRRVYVQCVNKDKGAVARKACTVACIGCGKCVKVCPFEAITLEN
NLAYIDPNKCKSCRKCEEVCPQGTIIALNFPPRKPKAEGEAVASKAAEPVKKVAEAAKKP
VETPAKPAEAPKKTAETSKASETAAPETPETPKTEA