Protein Info for HMPREF1181_RS14895 in Bacteroides stercoris CC31F

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 transmembrane" amino acids 96 to 115 (20 residues), see Phobius details PF13477: Glyco_trans_4_2" amino acids 26 to 95 (70 residues), 39.7 bits, see alignment E=1.4e-13 PF13579: Glyco_trans_4_4" amino acids 27 to 98 (72 residues), 31.1 bits, see alignment E=7.3e-11 PF13439: Glyco_transf_4" amino acids 34 to 138 (105 residues), 39.9 bits, see alignment E=1.1e-13 PF13692: Glyco_trans_1_4" amino acids 188 to 271 (84 residues), 50.2 bits, see alignment E=8.6e-17 PF00534: Glycos_transf_1" amino acids 198 to 283 (86 residues), 46.2 bits, see alignment E=1e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (315 amino acids)

>HMPREF1181_RS14895 glycosyltransferase (Bacteroides stercoris CC31F)
MKVLIVASYNYGKYSPFVSEQAESVKGLNIQIDYFPVKGKGVFGYLKNRKGLLKKIEEYH
PDIIHAHYGLSGLLANLQREVPVVTTFHGSDIHSGGIWLLLSKICMYLSAFNIFVSRRIY
ETAKYKKSNYAILPCGTDAHTFFELPKDEARNDLGWEQSGKYVLFAGAFENKVKNYALAQ
KAVTLVNGCQLIELKGYDRVQVNLLMNACDCLLMTSDKEASPMVIKEAMLCGCPIISVDV
GDVKDMISGIVGCFIARREPEDIADKLLHIFELRERTDGRNRIIQSGLDLSDIARRIQTI
YEDVCRIHAKNKYVV