Protein Info for HMPREF1181_RS13295 in Bacteroides stercoris CC31F

Annotation: DUF4199 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 35 to 57 (23 residues), see Phobius details amino acids 69 to 96 (28 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details PF13858: DUF4199" amino acids 14 to 171 (158 residues), 145.7 bits, see alignment E=9.3e-47

Best Hits

KEGG orthology group: None (inferred from 69% identity to bhl:Bache_1662)

Predicted SEED Role

"FIG00896350: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (175 amino acids)

>HMPREF1181_RS13295 DUF4199 domain-containing protein (Bacteroides stercoris CC31F)
MAENKGYMQYAMLFGTYLGGYWILKFILFPLGLTIPFLSFLFVGLTLCVPFMGYYYVRMY
RNTVCSGSISFLHAWIFTVFMYMFAALLTAVAHYIYFRFIDHGFVINAYESQIDILNKSG
VPDIEAYTNMFQETLETVKSLTPIDITMQLVSWNVFCGSLLALPTALFVMRRKKE