Protein Info for HMPREF1181_RS12090 in Bacteroides stercoris CC31F

Annotation: conjugative transposon protein TraN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13595: DUF4138" amino acids 32 to 112 (81 residues), 72.3 bits, see alignment E=2e-24 amino acids 124 to 361 (238 residues), 197.5 bits, see alignment E=1.3e-62 TIGR03780: Bacteroides conjugative transposon TraN protein" amino acids 119 to 361 (243 residues), 189.7 bits, see alignment E=3e-60

Best Hits

KEGG orthology group: None (inferred from 88% identity to bfs:BF1495)

Predicted SEED Role

"Conjugative transposon protein TraN" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (384 amino acids)

>HMPREF1181_RS12090 conjugative transposon protein TraN (Bacteroides stercoris CC31F)
MIQNRTYITVIFLLSFLSGKAQKIEELTAIPLEIGYEKTLHLIFPTEVKYYSIGGDYVIG
EKVTNCPEIIRLKAAEENFPGETNLSVVTADTKFYSYAIRYNAHPKESYMRINGEAPIPH
ILPVGKDKQLFLIFPATVSYVDYGSTNVEVEKAEGVDNILAVKAMRAYTEDTNISVVVEN
GKFYTFDLRYVPAPERFSFVIDKEDTQKVAILDEKERSSEQKERIREAIGKRLPLDLGLK
DKNAGMEFEIGNIFIDADILLLRMTLTNRTQIGYTTDFMRFYIQDAKIRKKTAVQQLEQN
ILFTFDYPEEIPAHESRTFTVAMNKFTIPDKKRLVIEIQEKNGGRHFLYKLKNKSLLDAE
EVFRNREQQETEEEADRILRRIAR