Protein Info for HMPREF1181_RS10005 in Bacteroides stercoris CC31F

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 PF07660: STN" amino acids 2 to 49 (48 residues), 33.6 bits, see alignment (E = 5.3e-12) TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 65 to 1100 (1036 residues), 704.2 bits, see alignment E=3.6e-215 PF13620: CarboxypepD_reg" amino acids 66 to 134 (69 residues), 39.5 bits, see alignment 1.2e-13 PF13715: CarbopepD_reg_2" amino acids 67 to 146 (80 residues), 67.9 bits, see alignment 1.3e-22 PF07715: Plug" amino acids 155 to 278 (124 residues), 73.1 bits, see alignment E=5.2e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 254 to 284 (31 residues), 56.2 bits, see alignment (E = 2.2e-19)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1100 amino acids)

>HMPREF1181_RS10005 SusC/RagA family TonB-linked outer membrane protein (Bacteroides stercoris CC31F)
MKFFYDHETVRQESQITLSFRNASLKEILDAIGKQTKLRFERKGNTILVNSKTVKEKPVS
KEEPIQVKGRIVDSTGEAIIGASIQAKGTSTGTITDIDGNFSLSVQEGQLLVISYIGYQS
VQIKAERKTLNITLKESDIAIDEVVVTALGIRKEKKALAYSVTEVKGEEMNRVKVANLAT
GLAGKVAGVNVSKPASGVMGSSRIIIRGNGSLNGSNQPLYVIDGIPMDNTNYGQTNMWGG
TDGGDGISSINSEDIESMSVLKGGTAAALYGSRASNGAIVITTKRGAIGKIKVEYNLSYT
NEHIVFKNNDLQWEYGAGSTGANAEQMAYGLAMQQIQQNGLPESMLPTLIDKIAPTLASQ
INMLSFGSKLDGKDVMQFDGVRRPYVASGKDNFKNFYENAWALTNNVAVSGGTEKVQFRI
AAGDQRFHDIMPNSKLERNNITLSVQSKLDEHLTLKANVMYVRERAKNRPGLGDLTSNAN
ATLFMLSPNTDVRLLERRVNDKGMEFLPTGQAYIGNPYFIAYNHSNKDSKDRVIGSIEAQ
YNFTPNWYVRGKFGGDMINRRNEAITPYGTAIDTDGAMSNSSIYNGEFNAEAIAGYTNTF
RDNSFSVDAFLGWNTMGTWYNQTTANGQGFIQPDFHAMGNSTVTNGNSSHSESYINSLFG
QLELSYHSMLYLTFTGRNDWFSALSYKGKNSSNHIFYPSIGAGFIISEAVRLPEWIPFLK
IRGSWAQSGGAVGPYNLGLTYAFNQKIHGQPIGSVSPTIVPNLNLKPLTSSAYEIGLDAR
FFNNRIGIDFTYYVRNTKDDIVDAGVSSASGYKGVRINAGKVHNHGVELLFTAVPVKTKD
FTWDTSFNFSYNKSEVKKITDEIDEFILETARTGHDGDNCGPAFIYHEVGEPYGIIKGES
YKRNDKGEIMYDDNGLPMKGGIKKLGESVAPYTLGVSNSFSYKGFSLNILIDAKIGGNIY
SMTNAHMYSFGRHAGTLPGREEGIIGKGVKADGKTPNDVKAEAMKYYMAMAGITEEFVYD
ASFVKLRELSFGYTFPQKWIKKLGMSSLSLAIVGRNLWNIYDDVPLVDPEAMLNIGNGQG
FESYGMPATRSIGFNLNVKF