Protein Info for HMPREF1181_RS09675 in Bacteroides stercoris CC31F

Annotation: conjugative transposon protein TraN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR03780: Bacteroides conjugative transposon TraN protein" amino acids 63 to 333 (271 residues), 374.9 bits, see alignment E=1.1e-116 PF13595: DUF4138" amino acids 80 to 332 (253 residues), 352.8 bits, see alignment E=4.7e-110

Best Hits

KEGG orthology group: None (inferred from 98% identity to bth:BT_2289)

Predicted SEED Role

"Conjugative transposon protein TraN" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (339 amino acids)

>HMPREF1181_RS09675 conjugative transposon protein TraN (Bacteroides stercoris CC31F)
MKKVILMMAFAIGMTGAYAQKTVKVEKTGNDTEETTDSGETETTPLPDKEDARRSPSTGD
LFDGLTRPVAFDRMVPPYALEVTFNKTVHLIFPAAIKYVDLGSADILAGKADGSENVLRV
KAALRDFSRETNLAVITDDGSYYTFNVKYADEPTKLNIEMKDFIHDGEAVNRPNNSQEIY
LTELGSESPLLVRLIMKSVYDNNKRLVKHIGCKRFGIQYILKGIYTHNGLLYFHTELKNA
SNVPFSVDFVTFKVVDKKVAKRTAIQEQVIVPLRAFNYVTAVDGKSKERTVFTLPKFTLP
DDKQLVVEMNEQNGGRHQRFILTNAELIRARVINELKVK