Protein Info for HMPREF1181_RS09135 in Bacteroides stercoris CC31F

Annotation: DUF349 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 617 PF03993: DUF349" amino acids 113 to 185 (73 residues), 57.2 bits, see alignment E=8.8e-20 amino acids 190 to 263 (74 residues), 57.5 bits, see alignment E=7.2e-20 amino acids 267 to 345 (79 residues), 73.8 bits, see alignment E=5.8e-25 amino acids 350 to 422 (73 residues), 88 bits, see alignment E=2.1e-29 amino acids 426 to 499 (74 residues), 86.8 bits, see alignment E=5.2e-29

Best Hits

KEGG orthology group: None (inferred from 85% identity to bhl:Bache_1260)

Predicted SEED Role

"FIG00896368: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (617 amino acids)

>HMPREF1181_RS09135 DUF349 domain-containing protein (Bacteroides stercoris CC31F)
MTDTHDTNLPDKPVELEEDKKTAEVSEPATTETPAEVTLTDKPAESVQKLTKEEILNKLK
AIAADVENAAKSEIDGLKQAFYKLHNSEQEAAKKLFVENGGAIEEFVPQADTLEEEFKNT
MSVIKEKRNALNAEQEKQKELNLQIKLSIIEELKELVESPEDANKNYTEFKKLQQQWNEV
KIVPQARINELWKNYQLYVEKFYDLLKLNNEFREYDFKKNLEIKNHLCEAAEKLANESDV
VSAFHQLQKLHQEFRDTGPVAKELRDEIWARFKAASTTVNRRHQQHFEALKETEQHNLDQ
KTVICEIIEAIDYSELTNFASWENKTQEIIALQNKWKTIGFAPQKMNVKIFERFRKACDE
FFQKKGEFFKSLKEGMNGNLEKKRALCEKAEALKDSTDWKATADELTKLQKEWKTVGPVA
KKYSDAIWKRFISACDYFFEQKNKATSSQRSVEQENLEKKKAIIEKLTAIDETMDVEEAT
QQVRELMKEWNGIGHVPFKEKDKIYKQYHSRIDKLFEHFNISASNKKLNNFKSSISSIQE
GSPQALYRERDKLVRACENMKNELQTYENNLGFLTASSKKGNSLLTELNRKVEKLKGDIE
LVKQKIKVIDNSINEAE