Protein Info for HMPREF1181_RS08470 in Bacteroides stercoris CC31F

Annotation: DUF4962 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 826 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF16332: DUF4962" amino acids 55 to 178 (124 residues), 82 bits, see alignment E=3.5e-27 amino acids 192 to 437 (246 residues), 190.4 bits, see alignment E=4.6e-60 PF07940: Hepar_II_III" amino acids 464 to 665 (202 residues), 45.9 bits, see alignment E=5.6e-16

Best Hits

Predicted SEED Role

"oligo alginate lyase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (826 amino acids)

>HMPREF1181_RS08470 DUF4962 domain-containing protein (Bacteroides stercoris CC31F)
MKTRLAVIGILCVLLIPAYANNPLRKAPYPQQDNIIYLNPAPLLVPPSMKQSDYLQFNLS
QDKNFKGDNDILSKPVPWCMFNPHKILDTGLWYWRFRSVSKTGEEMPWSKTYSFTVEEST
PRFATPPFEVFLNNIPKNSPRIYCFLNDRLEDARKNVRSNPEFEVMIDDARSALAMDFST
DTQPYKHVFAMSENFDKLNTAYQMLQYNLYVEKMLANVRCLLKQNPTKNFMGNDFKAGEL
VYLLAATYENFYDRFTAQERQRIEEIVMKVLDFYYKDRLLGRTENMFFDEHIWQFEIRRF
LQASLVMYDKYPAAKEYLEYYYELWNTRGPGTGFNRDGAWHNGANYFSANAVSLCYLPTL
FSYLTGFDFLQHPWYKNAGIGTAYTWLPGSLSAGFGDGHEKRNGKPLRIRSAFADFLART
TNDPYAAWYSAANNRYNTESETRLYRLASGKQRPADCELPADAPKAVWFRDCGEMVANSN
LRDLKKNVSLSFRSSPFGSGNHTHSNQNAFNLHYGGEAVYHAVGHYMNFSDPHNLLSYRN
TRAHNTLLINGIGQPFTPDAYGYIVRMFNGDNISYALGDASAAYCGISDIRLWKNSFKKY
HLTQTPENGFGETPLKKYRRHIFLLHPNKVVIYDELEASEKVHWDWLLHSPVKFDINPVT
ATLTTVNKEKGFTSVAQLFSGQKATITQTDKFAAPPNDADAQRGEDFTAPWSLTASFGPS
KSNRILTIIQVEADGMQAVQIMKEGNAFRCGEWTIEAELDAKRPGRLYIRNNRNNAVFSY
GNKKPEINGETYSCKEKDASVLFDSINGKWETQEMSDQRIQTMGKW