Protein Info for HMPREF1181_RS07945 in Bacteroides stercoris CC31F

Annotation: cobaltochelatase subunit CobN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1389 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 1359 to 1380 (22 residues), see Phobius details PF02514: CobN-Mg_chel" amino acids 125 to 1278 (1154 residues), 985.1 bits, see alignment E=2.4e-300

Best Hits

Predicted SEED Role

"CobN/magnesium chelatase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1389 amino acids)

>HMPREF1181_RS07945 cobaltochelatase subunit CobN (Bacteroides stercoris CC31F)
MKKKQLLGSGCAAVLVLLLIGIWNLWFSSTRVAFVNYQVISLGQISKANDNSFIKIAEVS
TDELDKLTSYDMVFINAMGMRVTEEQRAQIQKAADGGLPILTTSATNPANEIISLDSIQA
DTLRSYLENGGRRNYRSMLNYVRKHIDGKLISVDEPEAVTERSNDMIYHADPKKPDDEEL
GFNTIAGYNAFLQENGLLQEGAPRIIITGMMGEPADLIRKLEETGNVVYPVRSMKGFIGR
HQIDSVSPSAVINMAHGRMGDYIVDYLTQQNIPLFTPLNVNRLVEEWENDKMGMSGGFLS
QSVVTPEIDGAIRPFALFGHYRDEEGLQHAFAIPERLETFVETVNNYIKLQNKPNNEKRV
AIYYYKGPGQNAMAAAGMEVAPSLYNLLLHLKKEGYKVDGLPASSKELERMIQAQGAVFG
TYAEGAFDNFMKNGHPELIAKEQYESWVRKVLRPEKYAEVVSSFGEFPGEYMATGDGRLG
VARLQFGNVVLLPQNAAGKGDNAFKIVHGTDAAPPHTYIASYLWTQFGFKADALIHFGTH
GSLEFTPKKQVALSSNDWPDRLVGALPHFYIYSIGNVGEGMIAKRRAYAGLQSYLTPPFL
ESSVRGIYRELVEKIKIYNNAVSACSNGAHEQESRKDMRSEVDLRRASLAVKAVAVKLGI
HRELELDSVLTVPYTEDEILRIENFAEELATEKITGQLYTMGVPYEDARIKSSVYAMATE
PIAYSLLALDKLRKRADEKTVKHRALFTQHYLNPARTLITRLLANPALGTDELICRVADI
TPDELAKARKMEKSRNAPQGMMAMMMAMGDGEKAPMKKMPSSVEYTKEEITFALAVMEVE
RTIKNVGEYKKALIESPEKELLSMTNALNGGYTQPSPGGDPIVNPNTLPTGRNLYGINAE
ATPSEAAWEKGIQLANNTIEMYKRRHNDSIPRKVSYTLWSGEFIETEGATIAQILYMLGV
EPLRDAFGRVTDLKLIPSKELGRPRIDVVVQTSGQLRDIAASRLFLINRAVEMAAHAKDD
QYENQVAAGVVEAERVLIEKGLTPKDAREISTFRVFGGANGGYGTGIQGMVMSGDRWESE
KEIADTYLNNMGAYYGSEKNWEAFRQFAFEAALTRTDAVIQPRQSNTWGALSLDHVYEFM
GGLNLAVRNVTGKDPDAYLSDYRNRNNFRMQEVKEAIGVESRTTIFNPTYIKEKMKGEAG
AANTFAEIVQNTYGWNVMKPKAIDKEMWDEIYNVYVKDKFGLGLQEYFEQQNPAALEEMT
AVMLETVRKGMWKASEQQVADIAKLHTDLVNKYKPSCSGFVCDNAKLRQFIASKTDVQAA
AEYTKNIVQIREAAASDDKKGMVMKKEEMASTAEEQTNVLSNTIVGLVVVLAIVVLLLLV
RHRRKKLQE