Protein Info for HMPREF1181_RS07480 in Bacteroides stercoris CC31F

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 transmembrane" amino acids 83 to 101 (19 residues), see Phobius details PF00005: ABC_tran" amino acids 17 to 164 (148 residues), 111.3 bits, see alignment E=2.9e-36

Best Hits

KEGG orthology group: K02065, putative ABC transport system ATP-binding protein (inferred from 95% identity to bhl:Bache_0201)

Predicted SEED Role

"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>HMPREF1181_RS07480 ABC transporter ATP-binding protein (Bacteroides stercoris CC31F)
MIELKGLCKSFEEKEVLTDINATFENGKTNLIIGQSGSGKTVLMKCIVGLLTPEKGELLY
DHRNFLTMGKKEKKALRREMGMIFQSAALFDSMTVLDNVMFPLNMFSSDTLRDRTRRAMF
CLERVNLIEAKDKFPGEISGGMQKRVAIARAIALNPQYLFCDEPNSGLDPKTSLVIDELI
QDITREYNMTTLINTHDMNSVMGIGEKIIYIYEGHKEWEGSKNDIFTSTNERLNNFIFAS
DLFRKVKEVEIQNIEG