Protein Info for HMPREF1181_RS05985 in Bacteroides stercoris CC31F

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 transmembrane" amino acids 29 to 53 (25 residues), see Phobius details amino acids 60 to 78 (19 residues), see Phobius details amino acids 108 to 130 (23 residues), see Phobius details amino acids 135 to 159 (25 residues), see Phobius details amino acids 170 to 189 (20 residues), see Phobius details amino acids 207 to 227 (21 residues), see Phobius details amino acids 282 to 301 (20 residues), see Phobius details amino acids 313 to 334 (22 residues), see Phobius details amino acids 355 to 373 (19 residues), see Phobius details amino acids 379 to 404 (26 residues), see Phobius details amino acids 425 to 448 (24 residues), see Phobius details amino acids 454 to 472 (19 residues), see Phobius details PF18940: DUF5687" amino acids 13 to 492 (480 residues), 332.4 bits, see alignment E=3.6e-103

Best Hits

KEGG orthology group: None (inferred from 68% identity to bhl:Bache_1489)

Predicted SEED Role

"FIG00406426: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (495 amino acids)

>HMPREF1181_RS05985 hypothetical protein (Bacteroides stercoris CC31F)
MNLFIELRKHGKLAAKRNPMYEKNKFGKFWMYFMAVFWAGYLVFFGTSFAFAFNDGATEA
YHVLNSGLIFILCLDFLMRFPFQKTPAQEVKPYLLLPVKRNRLIDSLLIRSGLNGFNLIW
LFFFVPFAIISITRFYGITGVLTYSIGIWLLMVLNNYWFLLCRTLMNERVWWIILPILAY
GSIAAGMLVPDNSPLFDWSVDLGEGFILGHLLTFTGVFAAIVVLWFINRRVMIKLIYNEI
NKVEDTKVKHVSEYKFLDRYGEIGEYMRLELKMLLRNKVCKTALRTVFLVVISFTCILSF
TEAYDGQGMKSFILVYNFVIFGILFLSSLMSYEGNYIDGLMSRKESIYTLLRAKYILYSI
AILIPLFLMIPAMATGKLAVLSCIGWAVFVAGCVYFCLFQLAVYNNRTVDLNAKMTNRQN
MGTGLQNLISGAAFGVPLLMNFMLTTFFGPTVTAWILIAIGAGFILTSRFWLKNVYHRFM
KRRYKNMEGFRDSRQ