Protein Info for HMPREF1181_RS05935 in Bacteroides stercoris CC31F

Annotation: bifunctional nuclease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 transmembrane" amino acids 62 to 82 (21 residues), see Phobius details PF02577: BFN_dom" amino acids 25 to 134 (110 residues), 120.2 bits, see alignment E=3.9e-39 PF02151: UVR" amino acids 158 to 188 (31 residues), 32 bits, see alignment 7.6e-12

Best Hits

KEGG orthology group: K08999, hypothetical protein (inferred from 54% identity to bth:BT_4329)

Predicted SEED Role

"FIG00402727: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (193 amino acids)

>HMPREF1181_RS05935 bifunctional nuclease family protein (Bacteroides stercoris CC31F)
MNKKKIELQVLNISNSQAQAGAYAMVLGEINGMRQLPVIIGSAEAQSMMIEMRGIVPPRP
LTHTLFASVLKVLGATLLRVLIYKVDNGVFYSYLYMKTEETILRIDARTSDAVALALRMD
APIFIYDDILEAECLKTEHSITPTQQTDDAAADAATRKKTLKQLKEALQNAIDAEDYERA
AQLRDIINQHKKP