Protein Info for HMPREF1181_RS05645 in Bacteroides stercoris CC31F

Annotation: carbon starvation protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 65 to 70 (6 residues), see Phobius details amino acids 79 to 97 (19 residues), see Phobius details amino acids 128 to 150 (23 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 185 to 206 (22 residues), see Phobius details amino acids 226 to 246 (21 residues), see Phobius details amino acids 267 to 290 (24 residues), see Phobius details amino acids 311 to 331 (21 residues), see Phobius details amino acids 358 to 376 (19 residues), see Phobius details amino acids 388 to 409 (22 residues), see Phobius details amino acids 415 to 435 (21 residues), see Phobius details amino acids 446 to 465 (20 residues), see Phobius details PF02554: CstA" amino acids 5 to 142 (138 residues), 116.4 bits, see alignment E=1.6e-37 amino acids 156 to 299 (144 residues), 64.5 bits, see alignment E=8.2e-22 amino acids 300 to 429 (130 residues), 42 bits, see alignment E=5.4e-15 PF01566: Nramp" amino acids 72 to 386 (315 residues), 32.4 bits, see alignment E=5.5e-12

Best Hits

KEGG orthology group: None (inferred from 86% identity to bth:BT_1742)

Predicted SEED Role

"Carbon starvation protein A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (471 amino acids)

>HMPREF1181_RS05645 carbon starvation protein A (Bacteroides stercoris CC31F)
MITFTLCLLALVAGYFIYGRFIEHVFGPDDRKTPAITKADGVDYIPLPTWKIFMIQFLNI
AGLGPIFGAIMGAKFGSASYLWIVFGSIFAGAVHDYFAGMLSLRNGGESLPEIIGRYLGV
TTKQVMRGFTVVLMILVGAVFVAGPAGLLASLTPETLDTVFWIVVVFIYYILATLLPVDK
IIGKIYPLFAIALLFMAVGILVMLYVKHPVLPEVWDGLQNTHPNASALPVFPIMFVSIAC
GAISGFHATQSPLMARCMTSERHGRPIFYGAMITEGIVALIWAAAATCFFHENGMAETNA
AVIVDAITKDWLGTIGGILAILGVIAAPITSGDTAFRSARLIVADFLGMEQKTMRRRLYI
CIPMFLAAIGLLLYSLRDKDGFDMIWRYFAWANQTLSVFTLWAVTVYLVRARKLYFLTLI
PALFMTCVCTTYICIAPEGFGLSHPASYGIGAAGVAIALVWFVLWKKRQTD