Protein Info for HMPREF1181_RS05005 in Bacteroides stercoris CC31F

Annotation: JAB domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 PF04002: RadC" amino acids 26 to 146 (121 residues), 135.5 bits, see alignment E=4.5e-44

Best Hits

KEGG orthology group: None (inferred from 88% identity to bth:BT_2985)

Predicted SEED Role

"DNA repair protein RadC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (148 amino acids)

>HMPREF1181_RS05005 JAB domain-containing protein (Bacteroides stercoris CC31F)
MDIDYTVGEVELSYKPKFKKLHKVVSSEDAYRYLLPTYKEGTICYKEYFKVLFLNQSSQI
LGYTLISEGGITETCADVRVILQAALLTNSVTIILAHNHPSGSMKPSRQDMEITKQVKDA
AQLMRIKVLDHIILTDTGYYSFADEGQL