Protein Info for HMPREF1181_RS04635 in Bacteroides stercoris CC31F

Annotation: YgiQ family radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 601 TIGR03904: uncharacterized radical SAM protein YgiQ" amino acids 9 to 571 (563 residues), 803.6 bits, see alignment E=4.6e-246 PF08497: Radical_SAM_N" amino acids 9 to 302 (294 residues), 425.3 bits, see alignment E=1.3e-131 PF11842: DUF3362" amino acids 526 to 595 (70 residues), 37.6 bits, see alignment E=2.8e-13

Best Hits

KEGG orthology group: None (inferred from 83% identity to bsa:Bacsa_0100)

Predicted SEED Role

"putative Fe-S oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (601 amino acids)

>HMPREF1181_RS04635 YgiQ family radical SAM protein (Bacteroides stercoris CC31F)
MKEYRLTDWLPTTRKEVELRGWDELDVILFSGDAYVDHPSFGAAVIGRILEAEGLRVAIV
PQPNWRDDLRDFKKLGRPLLFFGVSAGCMDSMVNKYTANKRLRSDDAYTPDARPDMRPEY
PSIVYTQILKKLYPDVPVILGGIEASMRRLTHYDYWQDRVRPSILVDSGADALIYGMGEK
PIVELVQKLKQQQLVLDIPQLAYLTKEVLPQEGDITLFTHEECLKDKKKQASNFRHIEEE
SNKYAASRILQAVGKQTVVVNPPYAPLTEAELDRSFDLPYTRLPHPKYKGKRIPAYDMIK
FSVNIHRGCFGGCAFCTISAHQGKFIVSRSKESILKEVKAVMELPDFKGYLSDLGGPSAN
MYKMRGRDEAICKKCKRPSCIHPKVCPNLNTDHSPLLDIYHAVDSLPGIKKSFIGSGVRY
DLLLHQSKDPKTNKSTQEYTRELIVRHVSGRLKVAPEHTSERVLSIMRKPPFSQFGEFKK
IFDRINREEGLRQQLIPYFISSHPGCKEEDMAELAVITKRLDFHLEQVQDFTPTPMTVAT
EAWYTGFHPYTLKPVFSAKTQREKLAQRQFFFWYKPEERRNIINELRRIGRKDLIDKLYG
K