Protein Info for HMPREF1181_RS04575 in Bacteroides stercoris CC31F

Annotation: multidrug efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1036 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 341 to 360 (20 residues), see Phobius details amino acids 367 to 387 (21 residues), see Phobius details amino acids 393 to 414 (22 residues), see Phobius details amino acids 436 to 459 (24 residues), see Phobius details amino acids 472 to 498 (27 residues), see Phobius details amino acids 538 to 556 (19 residues), see Phobius details amino acids 865 to 884 (20 residues), see Phobius details amino acids 891 to 912 (22 residues), see Phobius details amino acids 919 to 942 (24 residues), see Phobius details amino acids 967 to 986 (20 residues), see Phobius details amino acids 999 to 1023 (25 residues), see Phobius details TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 4 to 1032 (1029 residues), 1164.6 bits, see alignment E=0 PF00873: ACR_tran" amino acids 4 to 1022 (1019 residues), 1103.2 bits, see alignment E=0 PF02355: SecD_SecF_C" amino acids 338 to 485 (148 residues), 27.5 bits, see alignment E=3e-10 PF03176: MMPL" amino acids 342 to 497 (156 residues), 36.1 bits, see alignment E=5.6e-13

Best Hits

KEGG orthology group: None (inferred from 92% identity to bth:BT_0305)

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1036 amino acids)

>HMPREF1181_RS04575 multidrug efflux RND transporter permease subunit (Bacteroides stercoris CC31F)
MKVSFFIDRPVFSAVISIVIVIVGIIGLTMLPVDQYPQITPPVVKISASYPGASALTVSQ
AVATPIEQEINGTPGMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRIKLAESRLP
AEVIQNGISVEKQAPSQLMTICLTSSDPKFDEIYLSNFATINVLDLLRRIPGVGRVSNIG
SRYYAMQIWAMPDKLANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDITIPITTQGR
LSSAKQFEDIVVRANANGSIIRLRDVARVSLEASSYSTESGINGENAAVLGIYMLPGANA
MEVADNVKKAMEEISANFPEGMSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVFLSL
QSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENVEHL
METEKLSPYEATKKAMNGLASALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSVL
LSTVVALTLSPVMCSLILKPDSGKKKNIVFRKINEWLNISNHKYIGVISRVIKHPRRLMS
AFGMVLIAIFIIHRLIPTSFLPVEDQGYFKVELELPEGSTLERTRIVTDRAVQYLEQNPY
VAYVQNVTGSSPRVGSNQARSELTVILKPWEERKNTTINKIMEKVEKDLREYPECRVYLS
TPPVIPGLGTSGGFEMQLEARGEATFENLVQAADTLMYYAQKRKELTGLSSSLQSEIPQL
YFDVDRDKVKMLGVPLADVFSTMKAYTGSVYVNDFNMFNRIYKVYIQAEAPYREHKENIN
LFFVKAANGAMVPLTSLGNASYTTGPGSIKRFNMFTTAVILGSAAQGYSSGQAMEIMEQI
AREHLPDNIGVEWSGLSYQEKKAGGQTGLVLTLVFLFVFLFLAAQYESWTVPIAVLLSLP
VAALGAYLGVAVCGLENDIYFQIGLVMLVGLAAKNAILIVEFAKVQVDNGGDLVQSAIHA
AQLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGMIFAIVFGIVLVPFFFV
LIYKAKEKVQHKIKKD