Protein Info for HMPREF1181_RS04350 in Bacteroides stercoris CC31F

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF00535: Glycos_transf_2" amino acids 5 to 152 (148 residues), 90.6 bits, see alignment E=1.7e-29 PF13641: Glyco_tranf_2_3" amino acids 11 to 196 (186 residues), 42.6 bits, see alignment E=1e-14

Best Hits

Swiss-Prot: 44% identical to WBBD_ECOLX: UDP-Gal:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,3-galactosyltransferase (wbbD) from Escherichia coli

KEGG orthology group: None (inferred from 66% identity to bth:BT_1645)

MetaCyc: 44% identical to UDP-Gal:alpha-D-GlcNAc-diphosphoundecaprenol beta-(1,3)-galactosyltransferase WbbD (Escherichia coli O7)
RXN-14558 [EC: 2.4.1.303]

Predicted SEED Role

No annotation

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.303

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>HMPREF1181_RS04350 glycosyltransferase (Bacteroides stercoris CC31F)
MPFSVILSIYYKESPLFLRESLDSLFSQTICPDEVILVKDGPIGDELDNVIDSYVTRYPY
LKVLSLVTNRGLGKALNEGLKYCSHELVARMDTDDIAMPERFEKQLAVFKKYPDIDVVGA
WISEFEDNVSNIKSVRKLPELPDDIRQFAKRRNPINHPVVMFRKSAVLAAGGYRHFPLFE
DYYLWIRMLMNGAKFYNIQESLLYFRFSPEMFKRRGGWKYMINELHFLQMMRQIHFISFS
QFMQNLFVRFSIRLIPNSLRAIIYTKLIR