Protein Info for HMPREF1181_RS03600 in Bacteroides stercoris CC31F

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 418 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 281 to 304 (24 residues), see Phobius details amino acids 325 to 349 (25 residues), see Phobius details amino acids 381 to 401 (21 residues), see Phobius details PF12704: MacB_PCD" amino acids 19 to 235 (217 residues), 88.6 bits, see alignment E=7.1e-29 PF02687: FtsX" amino acids 284 to 411 (128 residues), 56.2 bits, see alignment E=3.4e-19

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 82% identity to bhl:Bache_0256)

Predicted SEED Role

"ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (418 amino acids)

>HMPREF1181_RS03600 ABC transporter permease (Bacteroides stercoris CC31F)
MIDLWQEIYGTIKRNKLRTFLTGFAVAWGIFMLIVLLGAGNGIIHAFEQNASERALNSIR
LGGGWTTQSYEGLKEGRRIQLENKDLAATEKYFPDNIITAGATLRQGDVNISFGQEYINI
SLMGVHPNYVESEAIKTASGRFINRNDVKERRKVIILHKKSAEILFGKSRTEPVGRFVNA
GGVAYRVVGLYEDQGDQSSLAFIPFSTMQTIYNKGDKLNNIIFTTKNLTSEAANETFEKE
YRKVIAANHRFNPEDEGAIWIWNRFTQYIQTQNVAGLLRTAIWVIGIFTLLSGIVGVSNI
MLITVKERTREFGIRKALGAKPFSILRLIIVESVTITTFFGYIGMVAGIGVTEWMNSAFG
TQTADAGMFQARMFSDPTVDIGIAIQATLTLIVAGTLAGFFPAKKAVSISPIEALRAD