Protein Info for HMPREF1181_RS03025 in Bacteroides stercoris CC31F

Annotation: DUF1624 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 54 to 71 (18 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 163 to 184 (22 residues), see Phobius details amino acids 213 to 232 (20 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 323 to 344 (22 residues), see Phobius details amino acids 369 to 388 (20 residues), see Phobius details PF07786: HGSNAT_cat" amino acids 10 to 253 (244 residues), 34.4 bits, see alignment E=1.8e-12 PF16401: DUF5009" amino acids 12 to 95 (84 residues), 25.1 bits, see alignment E=1.2e-09

Best Hits

KEGG orthology group: None (inferred from 80% identity to bhl:Bache_0400)

Predicted SEED Role

"N-acetylglucosamine related transporter, NagX" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (396 amino acids)

>HMPREF1181_RS03025 DUF1624 domain-containing protein (Bacteroides stercoris CC31F)
MSSTVKTNKRILALDILRGVTIAGMIMVNNPGTWAHIYAPLRHAEWNGLTPTDLVFPFFM
FIMGISTYISLKKYNFEFSRAAGMKILKRTILIFLIGMGIGWFSRFCYYWTSPTEGIGFG
AQLWEAAWTFDRIRILGVMQRLALCYGATAIIALTMKHRNIPYLIATLLTGYFILLVCGN
GFAYNDTNILSVVDRAILTPAHMYKDNGIDPEGLLSTIPAIAHVLLGFCVGRMMLEGGKA
DENRESMLNSHLIKLFLAGTILTFAGFLLSYGCPINKKIWSPTFVLATCGLASSFLALLI
WIIDVKGYKKWSLFFESFGVNPLFMYVLGGVLGILFGSICFPWGEGSISIHGFLYKVLLM
PVFGETGGSLAYALLFVGINWCIGYQLYKRKIYIKL