Protein Info for HMPREF1181_RS02620 in Bacteroides stercoris CC31F

Annotation: lysine exporter LysO family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 33 to 52 (20 residues), see Phobius details amino acids 66 to 88 (23 residues), see Phobius details amino acids 96 to 114 (19 residues), see Phobius details amino acids 124 to 128 (5 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 176 to 199 (24 residues), see Phobius details PF03956: Lys_export" amino acids 8 to 199 (192 residues), 252.9 bits, see alignment E=8.4e-80

Best Hits

KEGG orthology group: None (inferred from 90% identity to bhl:Bache_0501)

Predicted SEED Role

"putative surface protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (201 amino acids)

>HMPREF1181_RS02620 lysine exporter LysO family protein (Bacteroides stercoris CC31F)
MKGSLIIIGFFVLGTLCGIFHLIPVDAVMDSKVSFYALCALMFSVGLSVGNDPQTLKNFR
SLNPRLVFLPIMTILGTLAGSAAVSLILTHRSLTDCLAVGSGFGYYSLSSIFITEYKGAE
LGTIALLANISREILTLLAAPLLVRWFGNLAPISAGGATTMDTTLPIITRTAGQQFVVVS
IFHGFVVDFSVPFLVTLFCSI