Protein Info for HMPREF1181_RS01540 in Bacteroides stercoris CC31F

Annotation: NAD(P)-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 PF00106: adh_short" amino acids 4 to 97 (94 residues), 29 bits, see alignment E=2.6e-10 PF01370: Epimerase" amino acids 4 to 223 (220 residues), 99.8 bits, see alignment E=5.9e-32 PF04321: RmlD_sub_bind" amino acids 4 to 308 (305 residues), 53.8 bits, see alignment E=5.5e-18 PF16363: GDP_Man_Dehyd" amino acids 5 to 325 (321 residues), 75.7 bits, see alignment E=1.6e-24 PF01073: 3Beta_HSD" amino acids 5 to 252 (248 residues), 50.3 bits, see alignment E=6.4e-17 PF07993: NAD_binding_4" amino acids 6 to 179 (174 residues), 45.3 bits, see alignment E=2.2e-15 PF13460: NAD_binding_10" amino acids 8 to 189 (182 residues), 38.6 bits, see alignment E=3.7e-13

Best Hits

KEGG orthology group: None (inferred from 87% identity to bhl:Bache_0795)

Predicted SEED Role

"NAD-dependent epimerase/dehydratase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (335 amino acids)

>HMPREF1181_RS01540 NAD(P)-dependent oxidoreductase (Bacteroides stercoris CC31F)
MESVLVTGASGFIGSFIVEEALRRGFGVWAGIRSSSSREYLQDRKIHFLELDFAHPGELC
AQLSSHKELYGKFDYIIHCAGATKCVDKNDFERVNYRQTKCFVDTLRELDMIPRQFVFIS
TLSVFGPIREKTYTPITEKDTPVPNTAYGLSKLKAERYLQSIPDFPYVIYRPTGVYGPRE
KDYFLMAKSIRRHTDFSVGFRRQDLTFVYVKDIVQAVFLGIEKQISRRTYFLADGKVYRS
RAFSDLIRKELGNPFVIRLRCPLIILKVVSLLAEYWAKRRNTTSTLNSDKYRIMKQRNWQ
CDITPTVEELGYSPEYDLERGVKETIAWYKDKGWL