Protein Info for HMPREF1181_RS01040 in Bacteroides stercoris CC31F

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 99 to 116 (18 residues), see Phobius details amino acids 122 to 144 (23 residues), see Phobius details amino acids 151 to 169 (19 residues), see Phobius details amino acids 210 to 233 (24 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 275 to 294 (20 residues), see Phobius details amino acids 314 to 335 (22 residues), see Phobius details amino acids 342 to 364 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

"N-acetylglucosamine related transporter, NagX" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (372 amino acids)

>HMPREF1181_RS01040 hypothetical protein (Bacteroides stercoris CC31F)
MATANKRLASLDLLRGFDLFCLLMFQPILITWLEIENSPALAPITNQFTHVEWQGVAFWD
LIMPLFMFMSGITIPFAMSRYKQGNIVDHHFYLRLLKRFFILFLLGWVVQGNLLALDIRQ
FHIFANTLQAIAVGYVVTALLYIWCSFRTQIGITILCFITYLLIFATAGKMNYEPGTNIA
EEIDRYVLGALRDGVIWTDGTWSFTASYHYTWILSSLNFIVTVMLGSFAGHILRLQKEPI
QRLKILLITGTVLVITALLMDPIFPIIKHIWSSSMTLFYGGVCFLLMGIFYYLIDIKGWK
YGIGWLKYYGMNSIAAYCLFEAVNFRCISDSLFFGLEQWLGVYYPLVGICFQSTIVLLIV
KWMYDHKIFLKA