Protein Info for HMPREF1181_RS00510 in Bacteroides stercoris CC31F

Annotation: 50S ribosomal protein L2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR01171: ribosomal protein uL2
  • amino acids 3 to 274 (272 residues), 389.5 bits, E=4.2e-121
• PF00181: Ribosomal_L2
  • amino acids 42 to 117 (76 residues), 100 bits, E=6.1e-33
• PF03947: Ribosomal_L2_C
  • amino acids 126 to 249 (124 residues), 178.7 bits, E=4.7e-57

Best Hits

Swiss-Prot: 96% identical to RL2_BACFR: 50S ribosomal protein L2 (rplB) from Bacteroides fragilis (strain YCH46)

KEGG orthology group: K02886, large subunit ribosomal protein L2 (inferred from 98% identity to bhl:Bache_1059)

MetaCyc: 54% identical to 50S ribosomal subunit protein L2 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L2p (L8e)" in subsystem Ribosome LSU bacterial

Protein Sequence (274 amino acids)

>HMPREF1181_RS00510 50S ribosomal protein L2 (Bacteroides stercoris CC31F)
MAVRKFKPTTPGQRHKIIGTFEEITARVPEKSLVFGKKSSGGRNNTGKMTMRYIGGGSKK
IIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADGEKRYIIAPNGLQVGATLMSGE
TAAPEIGNALPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSREGRYCVIKLPSGE
VRQILSTCKATIGSVGNSDHGLESSGKAGRSRWLGRRPRNRGVVMNPVDHPMGGGEGRAS
GGHPRSRKGLYAKGLKTRAPKKQSSKYIIERRKK