Protein Info for HMPREF1181_RS00470 in Bacteroides stercoris CC31F

Annotation: 50S ribosomal protein L24

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 106 TIGR01079: ribosomal protein uL24" amino acids 4 to 105 (102 residues), 116.4 bits, see alignment E=3.8e-38 PF00467: KOW" amino acids 8 to 39 (32 residues), 32 bits, see alignment E=7.7e-12 PF17136: ribosomal_L24" amino acids 41 to 105 (65 residues), 95.1 bits, see alignment E=2.4e-31

Best Hits

Swiss-Prot: 92% identical to RL24_BACFN: 50S ribosomal protein L24 (rplX) from Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)

KEGG orthology group: K02895, large subunit ribosomal protein L24 (inferred from 94% identity to bhl:Bache_1067)

Predicted SEED Role

"LSU ribosomal protein L24p (L26e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (106 amino acids)

>HMPREF1181_RS00470 50S ribosomal protein L24 (Bacteroides stercoris CC31F)
MSKLHIKKGDTVYVNSGEDKGKTGRVLKVLVDKKRAIVEGINMVSKSTKPNAKNPQGGIV
KQEASIHISNLNPVDPKTGKATRVGRKLSADGTLVRYSKKSGEEIK