Protein Info for HMPREF1181_RS00150 in Bacteroides stercoris CC31F

Annotation: rod shape-determining protein MreD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 166 transmembrane" amino acids 12 to 40 (29 residues), see Phobius details amino acids 51 to 68 (18 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 113 to 136 (24 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details TIGR03426: rod shape-determining protein MreD" amino acids 11 to 155 (145 residues), 66.3 bits, see alignment E=1.5e-22

Best Hits

KEGG orthology group: None (inferred from 85% identity to bhl:Bache_1148)

Predicted SEED Role

"Rod shape-determining protein MreD" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (166 amino acids)

>HMPREF1181_RS00150 rod shape-determining protein MreD (Bacteroides stercoris CC31F)
MIINYLHKIGWFVGLVLLQVLILNNVHIAGYATPFLYIYLILKFESDVPRNALMLWAFFL
GLAVDVLSDTPGMNAAATVLLAFLRPTFLRLFVPRDTLDTLVPAVRTMGISPFLKYLVAS
VLVHHGMLLTLEFFSFAHIGALLLRIVTSTLLTVACIMAVEGIRKK