Protein Info for HMPREF1181_RS00140 in Bacteroides stercoris CC31F

Annotation: rod shape-determining protein RodA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 52 to 70 (19 residues), see Phobius details amino acids 76 to 97 (22 residues), see Phobius details amino acids 118 to 128 (11 residues), see Phobius details amino acids 143 to 160 (18 residues), see Phobius details amino acids 181 to 203 (23 residues), see Phobius details amino acids 215 to 235 (21 residues), see Phobius details amino acids 242 to 263 (22 residues), see Phobius details amino acids 269 to 288 (20 residues), see Phobius details amino acids 294 to 312 (19 residues), see Phobius details amino acids 391 to 410 (20 residues), see Phobius details amino acids 422 to 445 (24 residues), see Phobius details amino acids 455 to 474 (20 residues), see Phobius details PF01098: FTSW_RODA_SPOVE" amino acids 15 to 200 (186 residues), 83 bits, see alignment E=1.1e-27 amino acids 217 to 479 (263 residues), 179.2 bits, see alignment E=6.1e-57

Best Hits

KEGG orthology group: K05837, rod shape determining protein RodA (inferred from 89% identity to bhl:Bache_1150)

Predicted SEED Role

"Rod shape-determining protein RodA" in subsystem Bacterial Cytoskeleton or Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (485 amino acids)

>HMPREF1181_RS00140 rod shape-determining protein RodA (Bacteroides stercoris CC31F)
MVRRDSIWKSLDWVTIIIYLMLIVFGWFSICGASYDYGDRDFLDFSTRAGKQFMWIVCSF
GLGFILLMLEDTLYDMFSYIIYIGLILLLVVTIFIAPDTKGSRSWLILGPVSLQPAEFAK
FATALALAKYMSAYSFTIKSWKSALMLAFLILLPMTLIILQRETGSALVYMAFFLMLYRE
GMPGVVLFSGICAVVYFVVGIRFDQVFIADTPTPIGEFVVLSMILLFAGGMVWVYKKKWE
PVRNIIVGSFIVLLVAYLVSEYITPFNLVWVQWGLCVVVTCYLFFLALSERHWSYFLIGL
FAIGSIGFLYSSDYFFNKVLEPHQQIRIKVLLGMEEDLAGAGYNVNQSKIAIGSGGLTGK
GFLNGTQTKLKYVPEQDTDFIFCTVGEEEGFIGSTAVLLLFLALILRLIALAERQQSAFG
RVYGYSVLSIFLFHLFINIGMVLGLTPVIGIPLPFFSYGGSSLWGFTILLFIFLRIDAGR
NRRLV