Protein Info for HGI48_RS21690 in Dickeya dianthicola 67-19
Annotation: restriction endonuclease subunit S
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)" in subsystem Restriction-Modification System (EC 3.1.21.3)
Isozymes
Compare fitness of predicted isozymes for: 3.1.21.3
Use Curated BLAST to search for 3.1.21.3
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A7L9RJV1 at UniProt or InterPro
Protein Sequence (502 amino acids)
>HGI48_RS21690 restriction endonuclease subunit S (Dickeya dianthicola 67-19) MKHGLVDQAYKFKKRVASSDTSNYRIAYKNELVVGFPIDEGVLGFQTKYPAGIVSPAYDI WKLKNETACHIPYLERYLRSSEARSLYASRMQGAVARRRSLTKTDFLSLEVPFPLLDDQI RIAHLLGKVEALITQRKHHLQQLDDLLKSVFLEMFGDPVRNEKGWDKPELKAFGKISTGN TPPRNEPANYDGNFIEWIKTDNITGDAVFVTPSTEHLSEVGARKARTVTNGALLVACIAG SIESIGRAALTDRTVSFNQQINAIQPGKDIEPLYLYGLFKLSRAYIQNHATKGMKKILTK GDFEKITMIKPPFEIQNQFATIVEKVESIKSRYQQSLADLEALYSSLSQRAFKGELDLSR VPLPDQPVADVSIEEYAAEPEMVVQTEPAIHLPATDNLSATLENAEARKALMARWLEAYR TQLDGTPFSAQQFITVAQARLAELHPDHDIALGASDYENIKAWVFEQVRARRLKQTRDII LINNKRQFGNRLLLRARRQPDQ