Protein Info for HGI48_RS21115 in Dickeya dianthicola 67-19

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 transmembrane" amino acids 7 to 30 (24 residues), see Phobius details amino acids 64 to 86 (23 residues), see Phobius details amino acids 98 to 118 (21 residues), see Phobius details amino acids 147 to 172 (26 residues), see Phobius details amino acids 193 to 215 (23 residues), see Phobius details amino acids 253 to 275 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 77 to 280 (204 residues), 80.7 bits, see alignment E=5.9e-27

Best Hits

Swiss-Prot: 32% identical to Y1215_PYRHO: Probable ABC transporter permease protein PH1215 (PH1215) from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 95% identity to ddd:Dda3937_01139)

Predicted SEED Role

"N-Acetyl-D-glucosamine ABC transport system, permease protein 1" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RIS4 at UniProt or InterPro

Protein Sequence (283 amino acids)

>HGI48_RS21115 sugar ABC transporter permease (Dickeya dianthicola 67-19)
MIGVGFIAPLLIPLLLFWVIPFFCSLYISFTDWDYISPDYHLVGVDNYRDLLQSDDFFGA
LGNTLAFAVAVVLPVVALGLGFALLLHRRCRGQRCYQAMIFSPWITPTVAVSVVWSWVFD
SRAGLANQLLGLFGVAGVPWLEQPGSAMLAVVIVTVWQGIGWTMMFFVSALNRIPAELYD
AARLDGGSRARRLLTITLPLISPTTFFLLVVNLVNAVQAFDQFQMLTQGGPGNSTRTLMY
LFYQQAFQQFSMGPAAATAVMILLLAGSLSLVNTLMARRWVYF