Protein Info for HGI48_RS18965 in Dickeya dianthicola 67-19

Annotation: efflux RND transporter periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 41 to 263 (223 residues), 141.7 bits, see alignment E=1.3e-45 PF13533: Biotin_lipoyl_2" amino acids 59 to 106 (48 residues), 32.6 bits, see alignment 8e-12 PF16576: HlyD_D23" amino acids 60 to 257 (198 residues), 49 bits, see alignment E=7.5e-17 PF13437: HlyD_3" amino acids 157 to 255 (99 residues), 50.5 bits, see alignment E=4.6e-17

Best Hits

KEGG orthology group: None (inferred from 88% identity to ddc:Dd586_3671)

Predicted SEED Role

"Membrane-fusion protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RHQ4 at UniProt or InterPro

Protein Sequence (267 amino acids)

>HGI48_RS18965 efflux RND transporter periplasmic adaptor subunit (Dickeya dianthicola 67-19)
MNNVNHSVFHRALGLMAFCVWVYHAQAQADDPLLINPAHPAQRAASADNQARGMLVAVEQ
ATISSDLAGRIVEMPFREGESFKKGDLLARFDCAIYQAQLAAAQAAMRAAEAELNQNQQL
AQLKSVGKHAVALSAARLAQSQAESQVYQIQVSRCRILAPFDGQVVKRRAQTYESVAPGA
PVLDIVNNRHLEITLLVPSRGLSMLKPGLTFTFTPDETGTPLQARISRLGARIDESSQTL
SLTGVIDTKDTALMAGMSGTAHFPEQP