Protein Info for HGI48_RS18810 in Dickeya dianthicola 67-19

Annotation: radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 PF04055: Radical_SAM" amino acids 97 to 265 (169 residues), 67.1 bits, see alignment E=1.1e-22 TIGR04085: radical SAM additional 4Fe4S-binding SPASM domain" amino acids 333 to 419 (87 residues), 33.3 bits, see alignment E=2.5e-12

Best Hits

KEGG orthology group: K06871, (no description) (inferred from 48% identity to eic:NT01EI_3077)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RI91 at UniProt or InterPro

Protein Sequence (442 amino acids)

>HGI48_RS18810 radical SAM protein (Dickeya dianthicola 67-19)
MSSSDHKVLNTPMYYFEGDDGLIYSHLPLRGIAFKCNKNSLPILEKLANHREISIEEQEH
QIIKKLSNWNVIGEHVKELPVIKALEDFKPFEATLLLTETCNLACSYCYARATGEKSEAM
SKAIAKKAVDTVIENAKSISSRTAEFRYLGGGEPTTEWELIVWVNNYIKYKADEAGIKTY
IRLITNGILINDEKAKWLKNNVDFVTLSFDVLPDLQLNRSFPNGKSSQKAVLRTSDLLTK
HGVPYHFRTTLSSESTGRLIEMIEYIRDYTSAKEVRLEPMAEIGRATDSELAKPKQQEFI
DQFKKAYFLGKENGINVTNKLIRNVERRGGRFCNIEFAVTPRGEVAGCHRYSRSENEGYE
FFHIGKLNNESFDFDINKINSLRSINNTSFSDCSNCFARWSCASGCLSARYDKNGVAEHG
PICHITRELLKFGVQQSLADDV