Protein Info for HGI48_RS18600 in Dickeya dianthicola 67-19

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 transmembrane" amino acids 38 to 58 (21 residues), see Phobius details amino acids 69 to 93 (25 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 144 to 168 (25 residues), see Phobius details amino acids 177 to 194 (18 residues), see Phobius details amino acids 232 to 251 (20 residues), see Phobius details PF01061: ABC2_membrane" amino acids 20 to 223 (204 residues), 61.8 bits, see alignment E=3.4e-21

Best Hits

Swiss-Prot: 31% identical to RFBD_YEREN: O-antigen export system permease protein RfbD (rfbD) from Yersinia enterocolitica

KEGG orthology group: K09690, lipopolysaccharide transport system permease protein (inferred from 98% identity to ddd:Dda3937_00445)

Predicted SEED Role

"O-antigen export system permease protein RfbD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RHQ1 at UniProt or InterPro

Protein Sequence (262 amino acids)

>HGI48_RS18600 ABC transporter permease (Dickeya dianthicola 67-19)
MGTSSMLNDLKSALKNPESWVVLSWYDIKQRYKRSTLGPFWVTISTAILVGMLSLLWSTL
FKLDVKDYLPFFCIGQVFWTYISTQLTEASNGFIQFDYIIRQSKISFTSIMLRILSRNII
VFLHNFIIIIFVITFVGPGWTFTALLSIIGFVLLSVALVSSSLILGVICTRFRDMQMIIQ
NILLVSFYFTPIMWKTDQLNEQWLYWVQFNPLVHFFNIIREPMLGHLPDQNSIIIAIAIT
VVLFILSMITLNKTKTKIAYWL