Protein Info for HGI48_RS18165 in Dickeya dianthicola 67-19

Annotation: DNA polymerase II

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 791 PF21474: DNApolII_N" amino acids 9 to 44 (36 residues), 72.8 bits, see alignment (E = 2.2e-24) PF03104: DNA_pol_B_exo1" amino acids 205 to 282 (78 residues), 27.1 bits, see alignment E=3.5e-10 PF00136: DNA_pol_B" amino acids 383 to 762 (380 residues), 127.8 bits, see alignment E=8.1e-41

Best Hits

Swiss-Prot: 71% identical to DPO2_ECOLI: DNA polymerase II (polB) from Escherichia coli (strain K12)

KEGG orthology group: K02336, DNA polymerase II [EC: 2.7.7.7] (inferred from 96% identity to ddd:Dda3937_01373)

MetaCyc: 71% identical to DNA polymerase II (Escherichia coli K-12 substr. MG1655)
3.1.11.-; DNA-directed DNA polymerase. [EC: 2.7.7.7]

Predicted SEED Role

"DNA polymerase II (EC 2.7.7.7)" in subsystem DNA-replication or DNA Repair Base Excision (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RH92 at UniProt or InterPro

Protein Sequence (791 amino acids)

>HGI48_RS18165 DNA polymerase II (Dickeya dianthicola 67-19)
MTFSPPRQGFVLTRHWQDTPAGIQVECWLATNTGPCRVRLSPQQAVAFVPMRHQARITQL
LSGEKHWQLRPLALKNFHHEPQLGLYCLHYRQLLRLEKKLQEAGIAVYEADIRPPERFLM
ERFITAPVWFSGEEAADGLIDQVRLKPAPDYRPPLKTVSLDIETSRHGELYCIGLEGCGQ
RQVFMLGPENGNADDAGDLTLEYVASRPQLLEKLNQWLHTHDPDVIIGWNLVQFDLRVLQ
QHAERYRIPLRLGRNGQELEWREHGYRQGHFFAGAPGRLIVDGIEALKSATWNFASFSLE
FVSRSLLGEGKASDNPYQRLEEIEQRFQQDKPALARYNLKDCELVTRIFEKTHLMSFLLE
RASVTGLAADRSGGSVAAFTHLYLPRMHRAGFVAPNLGEVPPEASPGGYVMDSRPGLYDS
VLVLDYKSLYPSIIRTFLIDPVGLVTGLQQPDEQHAVEGFRGAWFSRRHHCLPAIVEGIW
HERDLAKQQNNQPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITLRGHDIMRQTRSLI
EAKGYQVIYGDTDSTFVWLKRPHSEDDANLIGHELVAYINDWWQQHLHQQHGLTSALEME
YETHFHRFLMPTIRGAELGSKKRYAGMTITAQGEQQMVFKGLETVRSDWTPLAQQFQQQL
YQRIFHRESYQEWVREYVAKTLNGEYDDLLVYRKRLRHKLSDYQRNVPPQVRAARMADDY
NRQHDRPLQYQSGGWISYVITVHGPEPLENRRSPLDYNHYVEKQLQPVADAILPFIHDDF
ATLITGQMGLF