Protein Info for HGI48_RS18130 in Dickeya dianthicola 67-19

Annotation: DedA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 113 to 120 (8 residues), see Phobius details amino acids 141 to 166 (26 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 218 to 237 (20 residues), see Phobius details PF09335: SNARE_assoc" amino acids 36 to 159 (124 residues), 69.7 bits, see alignment E=1.7e-23

Best Hits

Swiss-Prot: 63% identical to YABI_ECOLI: Inner membrane protein YabI (yabI) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 97% identity to ddd:Dda3937_01363)

Predicted SEED Role

"DedA family inner membrane protein YabI"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RH93 at UniProt or InterPro

Protein Sequence (255 amino acids)

>HGI48_RS18130 DedA family protein (Dickeya dianthicola 67-19)
MEAWLEHLITQSLAWSLAAVLLVAFLESLALVGLLLPGTLMMASLGALIGSGNMGLYPAW
GMGIIGCLLGDWISYFIGWRFKDRLHNWSFLQKHRAYLYRTEKMLHQHSMATILIGRFFG
PTRPLIPMVAGMLELSPRRFALPNIIGCLTWPPVYLMPGILAGVAIDIPKQADSGSFKWL
LLITAILLWGAGWLVWRLWRARRGAKAESTGWLTPARLYWLAPLASVIAAVSLWQLWQHP
LMPVYRRLLWQILNV