Protein Info for HGI48_RS17280 in Dickeya dianthicola 67-19

Annotation: primosomal replication protein N

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 106 PF00436: SSB" amino acids 5 to 98 (94 residues), 43.7 bits, see alignment E=1.2e-15 TIGR04418: primosomal replication protein PriB" amino acids 5 to 101 (97 residues), 120.2 bits, see alignment E=1.6e-39

Best Hits

Swiss-Prot: 91% identical to PRIB_PECCP: Primosomal replication protein N (priB) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K02686, primosomal replication protein N (inferred from 96% identity to dze:Dd1591_0775)

MetaCyc: 82% identical to primosomal replication protein N (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"Primosomal replication protein N" in subsystem DNA-replication

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D932 at UniProt or InterPro

Protein Sequence (106 amino acids)

>HGI48_RS17280 primosomal replication protein N (Dickeya dianthicola 67-19)
MVTANRLELSGTVCKTPIRKVSPSGIPHCQFVLEHRSVQEEAGLSRQAWCRMPVIVSGHP
SQAFTHSITVGMQLRVQGFISCHQGRNGLSKVVLHAEQIELIDSGD