Protein Info for HGI48_RS16370 in Dickeya dianthicola 67-19

Annotation: cytochrome b561

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Swiss-Prot: 52% identical to C561_ECOLI: Cytochrome b561 (cybB) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 94% identity to ddd:Dda3937_03159)

MetaCyc: 52% identical to superoxide oxidase (Escherichia coli K-12 substr. MG1655)
RXN-20148 [EC: 1.10.3.17]

Predicted SEED Role

"cytochrome b(561)"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.10.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RGL9 at UniProt or InterPro

Protein Sequence (177 amino acids)

>HGI48_RS16370 cytochrome b561 (Dickeya dianthicola 67-19)
MKTKYHSSQIVLHWLALLLVIVTYAAMELRGFAPRGSSARALMSTIHYSCGVSVWVLMIL
RVVQRFRYPTPPITPPLGRLLVIASHAVHGFLYLMFLALPVLGVVGMYYRGADWSVFGIA
MPFAAEPDGDIKQTLLNIHELIANAGYFLVGLHAAAALYHHYVVRDDTLLRMMPDKK