Protein Info for HGI48_RS16090 in Dickeya dianthicola 67-19
Annotation: ABC transporter ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 84% identical to YADG_ECOLI: Uncharacterized ABC transporter ATP-binding protein YadG (yadG) from Escherichia coli (strain K12)
KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 98% identity to ddd:Dda3937_04074)Predicted SEED Role
"ABC-type multidrug transport system, ATPase component"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A385Y0R2 at UniProt or InterPro
Protein Sequence (307 amino acids)
>HGI48_RS16090 ABC transporter ATP-binding protein (Dickeya dianthicola 67-19) MTYALELANVTKTYPGGVRALRGIDLRVEAGDFYALLGPNGAGKSTTIGIISSLVNKTDG RIQVFGHDLDRDIVNAKRQLGLVPQEFNFNPFETVMQIVVNQAGYYGVPRQEALRRAEKY LNQLDLWGKRNERALMLSGGMKRRLMIARALMHEPRLLILDEPTAGVDIELRRSMWGFLK ALNGQGTTIILTTHYLEEAEMLCRNIGIIQSGQLVENTSMKALLAKLQSETFFFDLAAKS ALPRLEGYQHRLVDTSTLEVEVKREQGLNGIFSQLSAQGIQVLSMRNKANRLEELFVALL NNNGDKA