Protein Info for HGI48_RS15965 in Dickeya dianthicola 67-19

Annotation: family 78 glycoside hydrolase catalytic domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 875 transmembrane" amino acids 604 to 623 (20 residues), see Phobius details PF08531: Bac_rhamnosid_N" amino acids 131 to 299 (169 residues), 134 bits, see alignment E=1e-42 PF05592: Bac_rhamnosid" amino acids 313 to 421 (109 residues), 48.5 bits, see alignment E=1.5e-16 PF17389: Bac_rhamnosid6H" amino acids 436 to 766 (331 residues), 181 bits, see alignment E=8.2e-57 PF17390: Bac_rhamnosid_C" amino acids 772 to 829 (58 residues), 31.4 bits, see alignment 2.7e-11

Best Hits

KEGG orthology group: K05989, alpha-L-rhamnosidase [EC: 3.2.1.40] (inferred from 79% identity to dze:Dd1591_1049)

Predicted SEED Role

No annotation

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.40

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RGM5 at UniProt or InterPro

Protein Sequence (875 amino acids)

>HGI48_RS15965 family 78 glycoside hydrolase catalytic domain (Dickeya dianthicola 67-19)
MLRINCKSSSIVVDKLPLHLNWSVGYKQKAYNLSVVKNGKVIYSANQTGNSTALQIDYFE
LDNNSEYIVEVCVYNQDDQCEILKNTFRTGNFGRFTGKWISGGNTLVSESDYYLENRNAI
LRKTFIIDQDVIDSNINVVGLGYYKLYINGKEVGDSELNTDWTNYNQTVYYDTYDVDSYL
KNGENEILIELGNGWFNPAPLTLFGKYNLRNILAIGEPQAIADLVINYSDASLTISSDES
WEVCDGPYLFNNIYLGEVLDFRFMKGGSTFLVDNPIWKPVEINDGPRGKLVPSFIPKIKK
SVHLTPHHIYVVDENEVIIDFGEILTGFIDITLAAYNAQEVELTYSEEINSEYILQTDST
LAGLVGKEVDSGFIIPGGDGAPYRAEQKDKIICRNGFNRFINKFTYHSFRYVQIKGLNLD
QINEIFAIYVHTNLPENGSFSCSDPYLNKLFDIGRLTKLNNIHSVFSDCARERFAYGGDI
VALANSQIYQFDTASLYEKTIYDFMDDLRQNGGVSETAPFVGIKTNGTGGDAGPLGWQLA
FPYLLNIHYQHYGNLQLIKDMFPYFEKQIAYLNGFSLDELSLCCLGDWGSQDKSAGDYKS
SSPAIRFTTVCFYYFHVLLIARFSKYLSLDEKSEFYSSQANKLKDEIIFRYKNHDGSFSD
KSQTSYVFAIYFNLVDDINDAVNRLVNLIQDNGYVVRCGIFGQSFFYEILRQYGHHDVIY
HWLNSKHGFKKMLGDECRTLKEYFGDNKHGSCNHAMFSSYVSWLYQGLGGISFQEQSVGA
DQVVISPYIMDTMDYVECEHQSIRGVISCKWYRIKNTIELVIKVPFNLKKCILSLDKRYN
IHADNVFEISSDKSKRYFDITDVGEVRIMLNPTLH