Protein Info for HGI48_RS15780 in Dickeya dianthicola 67-19

Annotation: HlyD family efflux transporter periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 transmembrane" amino acids 40 to 60 (21 residues), see Phobius details PF13533: Biotin_lipoyl_2" amino acids 82 to 114 (33 residues), 25 bits, see alignment 2.7e-09 PF13437: HlyD_3" amino acids 134 to 249 (116 residues), 41.8 bits, see alignment E=3e-14

Best Hits

KEGG orthology group: K02022, (no description) (inferred from 71% identity to ddc:Dd586_3098)

Predicted SEED Role

"HlyD family secretion protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RGJ1 at UniProt or InterPro

Protein Sequence (282 amino acids)

>HGI48_RS15780 HlyD family efflux transporter periplasmic adaptor subunit (Dickeya dianthicola 67-19)
MRLAKFVQYLNTYFSSHRQQDPQALSDVGQALVEDTPRIIRLSIWIMLAFAVFLVGWASV
AEIDEVVQATGKTISQSQRYRVQAQEAGELSDMYIREGQIVNIGDPLMRLEHVQPSNTNT
SDAVKNKADKLSLVVSPVRGIIRYILVDAATGQISPGRTLVEITPLDDKLLIEARVRLQD
MAFLRPGQEAMMTFTAYDDITFGGLKGYIDQISQDMATDQAGNSFYLVRLRTEKNYLGNI
DKPLLILPGMAAHVNIITGRKTLLSYLLKPIRQARAEALRER