Protein Info for HGI48_RS15685 in Dickeya dianthicola 67-19

Annotation: nickel/cobalt transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 69 to 90 (22 residues), see Phobius details amino acids 111 to 134 (24 residues), see Phobius details amino acids 150 to 168 (19 residues), see Phobius details amino acids 233 to 254 (22 residues), see Phobius details amino acids 260 to 288 (29 residues), see Phobius details amino acids 309 to 331 (23 residues), see Phobius details PF03824: NicO" amino acids 70 to 330 (261 residues), 119.8 bits, see alignment E=7.5e-39

Best Hits

KEGG orthology group: None (inferred from 81% identity to dze:Dd1591_1096)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RGH3 at UniProt or InterPro

Protein Sequence (346 amino acids)

>HGI48_RS15685 nickel/cobalt transporter (Dickeya dianthicola 67-19)
MPVNRSHVTRNYLRWWPLALFLLLMGAAAWQAMVWWPSILLQSIEWQRSLHQQMAELMEQ
VRAQPHQAGWTLVMFSLAYGVLHAVGPGHGKVVIATYLATHPSRLKGSLQLTFASALLQG
TVAIVLVTLVLAVLQLSSRALHIGSYWMEKSSFVLVAGLGGWLCLRGFRRLRALRFTRAK
PRIRSLTPRDASASGIRLAPVVRHLHDDNCGCGHQHVPAAEALNHSDGWRTRLMVVLAMG
LRPCSGAILVLLFAKVLDVFVWGVISALVMALGTGLTVSLLGVAVLFCRRQLERLSRAGA
FSSPRWQPLVWSALSLAGGMTLTFVGIVLYLTTQPDVMGGIRPVLG