Protein Info for HGI48_RS14830 in Dickeya dianthicola 67-19

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1834 PF00270: DEAD" amino acids 100 to 182 (83 residues), 41.8 bits, see alignment 1.5e-14 PF00271: Helicase_C" amino acids 1097 to 1153 (57 residues), 29.6 bits, see alignment (E = 1.1e-10) PF09369: MZB" amino acids 1637 to 1708 (72 residues), 40.8 bits, see alignment (E = 4.2e-14)

Best Hits

Predicted SEED Role

"Probable ATP-dependent helicase Lhr"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RG05 at UniProt or InterPro

Protein Sequence (1834 amino acids)

>HGI48_RS14830 DEAD/DEAH box helicase (Dickeya dianthicola 67-19)
MINKNKITERSGIHETAKSLADNLKQYIEAQYHIRDEGLIEERRALLQQDGTIAQVPYIE
ATPVYKLGTPYSELPIPKEASNVLTQLSEMGVGLYPRPYEHQSQALASFLGDEASDLVIA
TGTGSGKTESFLMPIIGNLAIEAARRPESASLPGCRAILLYPMNALVNDQLARIRRLFGD
SEASKVLMAGRHSPVRFGGYTGRTPYPGRRSSKGDEQFIKPLFDEFYSKLADNAPVRAEL
ERIGRWPSKDLEAFYGQDASRTRTYISGKKAGKQFVSNNWGERLITQPGDRELMTRHEIQ
HRCPELLITNYSMLEYMLMRPIERNIFEQTRDWLRTDTRNELILVLDEAHMYRGAGGAEV
ALLIRRLCARLDIPRERMRCILTSASLGSVTDGERFAQDLTGLSATSPRKFRIIEGTRES
RPLAQAVTNNEAEALANFDLNSFQRVADDLESAFAAIDTLAAQIGWKKPTIKDHSTLRSW
LFDNLTGFGPLEMLIEIVSGKAERLDVLSGKLFPDTPQEIAARATDALLALGCYAQRNSD
NRVLIPTRMHLFHRGLPGLYACIDPECNQRLGNHSGPTILGRLYTKPLAHCTCASKGRIY
ELLTHRDCGAAFIRGYVSSEMDFVWHQPNGPLSEEGNVDLVPVEILVEETPHPHSDYQDR
WLHIATGRLFKQCPEDGSGYRKVFIPDRGSETTFDECPVCMRKTKSDQDEPSKIMDHVTK
GEAPFTTLVRTQMSRQPASRPTDIRHPNGGKKVLIFSDGRQKAARLARDIPRDIELDLFR
QSIALACSKLEEIAREPRPTTTALYLAFLSILSEHDLLIFDGEDSRKVVAARAEFERDCD
SDLEQAFDDGFPPQEPPSRYKMALLKLLCSNYYSLSGTTVGFVEPSQLKTKKLREAAQGK
NINIEDKDVHALAVAWIDTLLTEFAFDESIDPTLRSKAAGFYKPNWGSKGQFGKTLRKTL
MQHPAMGELSVKALEEIFRTQLASVKDGVWFLSPNSLRLQVDLSHIWKQCPDCTVLMPFA
LGHSTCLACGSNNVKTVDPSESSYINSRKGFWRSPVKEALVSNSRLLNLSVEEHTAQLSH
RDRASVHATTELYELKFQDVLIRDADRPIDVLSCTTTMEVGVDIGSLVAVALRNVPPQRE
NYQQRAGRAGRRGASVSTVVTYSQNGPHDSYYFLNPEHIVAGSPRTPEVKVNNPKIARRH
VHSFLVQTFFHELMEQGIYSPGETTSMLEKALGTTREFFHGAKDTGLNLDGFDSWVTNRV
LSISGDLRTSVAAWLPFALETGGLSLGDWFAKVAKEFLNTLHRLAENVPLPVIPVGEEDE
GDDENISGVKFEQEELLEFLFHHGLLPSYAFPTSLCSFLIEEVARNSRGSSEVRTVQQPQ
QSISQALSEYAPGRLIVIDKKTYRSGGVFSNALKGEINRARTLFDNPKKFIHCDNCSFVR
DPHNYQRDNSICPICGGILKEEIMIQPEVFGAENARELNEDDREQEITYATVAQYPQPAD
PEDFEFKECGTHLLSTHATDQKLVTVNRGKNEGQSSGFSVCTECGAASVFDSYSSTKGPH
KRPYKYIESKDTPHSCSGEYKRVFLGHDFRTDLLLLRLTVASPLATDTSNVIVLRMYEDA
LYSIAEALRLAASRHKQLDLDPAEFGSGFRILPTAGEDAQTLDLFLYDTLSGGAGYAEVA
ARNLEDILTATLELLEGCECDTSCTDCLNHFHNQHIQSRLDRKLGASLLRYAMYGEVPCC
SLPAVQADKLSQLRASLELDSFQSAEGGTQEAPLIVELNGSSVALGCYPGLIDRPDFRHA
VCNAKNAGKYLALNEYLLRSNLPEAHLKVRELLR