Protein Info for HGI48_RS13980 in Dickeya dianthicola 67-19

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 989 PF13589: HATPase_c_3" amino acids 27 to 136 (110 residues), 55.6 bits, see alignment E=9.1e-19 PF19191: HEF_HK" amino acids 773 to 829 (57 residues), 27.5 bits, see alignment 5.4e-10 PF02518: HATPase_c" amino acids 878 to 983 (106 residues), 48.7 bits, see alignment E=1.4e-16

Best Hits

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RFF1 at UniProt or InterPro

Protein Sequence (989 amino acids)

>HGI48_RS13980 ATP-binding protein (Dickeya dianthicola 67-19)
MIETLAFRTQARTVDHLGREQIADCPTAISELWKNAYDAYARNVSLHIFDDPEPVAAVFD
DGHGMSYDEFISRWLVVGTDSKYDKSALDEDVRDGLPKRTKQGQKGIGRLSSANIGPLLL
IVSKRKNVDFVAALIDWRIFENPYLVLSDIEIPVTQFVDKAELFQLLPQLFDRLTDNIWG
DTSDEKRTNRLKLAWETYDRVILDSDPKAGKPSELIADTIINARFEERHFEPWLVWSELR
QHGTALIVSDINYDLKAQLPSIELDSNVKNIRDAFFGTLSAFTDPYIGKDASEFNAFDPE
FSCEVKTWSDTVSSTIIENDREAINREVTEEMEHVLSGNIDADGVFRGQVKAFGEWRKLG
TDYEIYPPKDLTIPKGPTTFIGPFSLHIATFEQTRINSTLSDADFSRFNGLAKQHSGFLI
FRNGLRVLPYGRETNDFFEIEKQRSINAGREYWNARRMFGRIAISRELNPNLRDKAGREG
FIDNRATKVLREIVKNILRRAAYEYFGSNSELRKDLLPDIKSQNEKEKAERERKELAKKN
AKKFHSRLKVNLPLLVTIFDETQDIVSSTYIDNEQDLDDAQTLIGELSARLADLRIVGAP
AKLGSAEDDYRAFRAMYAEMLDRIRTLEEKRAVAIQKINPAKPEDIAQKQLNSHASRLQA
RLRIWRKSIDALQEAERGRVSALFEERNKVFHHEAMPLVDQVRLGLLGLDEALEQMKALY
AKLDMENEDTFQSYLDALELMSENINIELIARQGTVENITLRDDLNRLNQVAQLGITVEI
LGHELTNNERMVREGIRQIRAVGDVPGTSLVVEGFEALSQQLEFLSPLKVSGNKMRRQIF
GKEIEDYIVSFFDVVMRNRAIKIHASDVFRTFSIYEQPSRLYPVFVNLVNNSVYWLVNSH
TPEPEVYLSVEDDKIIVSDNGPGINPVDQENLFKMFFTRKSSGGRGIGLYLCRVNLMAGG
HSIEYATERKFRRLKGANFVIDLKGANFG