Protein Info for HGI48_RS13780 in Dickeya dianthicola 67-19

Annotation: LysE family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 48 to 66 (19 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 177 to 195 (19 residues), see Phobius details PF01810: LysE" amino acids 20 to 196 (177 residues), 34.6 bits, see alignment E=6.9e-13

Best Hits

KEGG orthology group: None (inferred from 87% identity to dda:Dd703_1415)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RF45 at UniProt or InterPro

Protein Sequence (202 amino acids)

>HGI48_RS13780 LysE family transporter (Dickeya dianthicola 67-19)
MIHGSEYIKVTLYIALFLSIPGPTNTLLLCSGYTQGFVKSIKLTLSEWLGYLLAVTTWGL
LFNYLAQHGNPVLSVIKILSAFYVVYLAVKVWRFSLHQASGNITFSTVFITTLLNPKAFL
FADSIIPPSAFIYQDSYIYAMLCLLLALLPISFIWIYSGTLIKRSDASNQYRLKPTLFYR
GASLIISLFAASMFYKSVSMMF