Protein Info for HGI48_RS13390 in Dickeya dianthicola 67-19
Annotation: flagellar filament capping protein FliD
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 93% identity to ddd:Dda3937_02230)Predicted SEED Role
"Flagellar hook-associated protein FliD" in subsystem Flagellum
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A7L9REX5 at UniProt or InterPro
Protein Sequence (486 amino acids)
>HGI48_RS13390 flagellar filament capping protein FliD (Dickeya dianthicola 67-19) MATTVSTNSDIISSIGMNLGTSVSGSSLDLSSLISKLQTVEEQRLTPYNNKQTSLSKQAL AYDAVEAAMKNLQSTTTTLQNMKTITSTAVTSTNTAFSATTDSTAVAGSYSVFVNNIAQA QSQTSGNFSSASTALVSGGTSSTSSTITITQSSQSKPLTITLTDDKTSLNDIRDAINNAG GSVSATILNDGTNNKLILTAKDTGTKSAMTISVSGSLSSSLSSSSFSEQVAAKDASFTIN GMSVTSQSNTVTTAISGVTLNLKAASTTGSNAENLTIASDITATEKAIQNWVTAYNNVLD VIKTQTNYTAPTSTEQTSGSQSSSNGALVSDSTIRAVKRQLQGLMSNLQSNGTLNTMADL GITQDPTNDGKLAVETTKLESTLKSSASSVTQFFVGNGTTTGFATQAGNYLTRTVDSTDG LIKSAQANIKTNQANVTKQLTSIQDSIDSTMARYKTQFTNLNTLLSKLSSTSSYLTQQFN KTNSSS